VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research. - Abstract - Europe PMC
Frontiers | MATCHCLIP: locate precise breakpoints for copy number variation using CIGAR string by matching soft clipped reads | Genetics
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
Alignment with STAR | Introduction to RNA-Seq using high-performance computing - ARCHIVED
Identify insertions with IGV
VarDict uses soft-clipped reads for local realignment to... | Download Scientific Diagram
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
Reads filtering · Issue #879 · igvteam/igv.js · GitHub
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
The formation of soft-clipped reads. Soft-clipped reads span the... | Download Scientific Diagram
SUMO - NGS Utilities
ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly | Genome Medicine | Full Text
Identify insertions with IGV
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
SIns: A Novel Insertion Detection Approach Based on Soft-Clipped Reads | Genetics - Frontiers
BAMClipper: removing primers from alignments to minimize false-negative mutations in amplicon next-generation sequencing | Scientific Reports
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis | Scientific Reports
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information | BMC Bioinformatics | Full Text
eKLIPse: a sensitive tool for the detection and quantification of mitochondrial DNA deletions from next-generation sequencing data - Genetics in Medicine
ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information | BMC Bioinformatics | Full Text
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
Challenges and importance of mid-sized deletion identification for genomic medicine - SeqOne Genomics
Discordant reads are blue (plus strand) or red (minus strand). Soft... | Download Scientific Diagram
![PDF] Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads | Semantic Scholar](https://d3i71xaburhd42.cloudfront.net/16b34a01c549bc1b12b6c5a17e85e1db117f26e3/2-Figure1-1.png "PDF] Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads | Semantic Scholar")